species:   Fugra
pid:       PID0944
parent:    FgmilR-7dps-84
paralog:   
locus:     NC_026477.1:3318960-3319084
matures:   ['CGACCUUGGAUCUCGCCUGCGCC', 'CGCAGAGCAGACAAGGCCAAAGU']
srr:       SRR6516242
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram NC_026477.1:3318960-3319084

1 out of bounds
7 alignments
7 proper strand
7 stranded perfect matches

    **************************                                                                 **************************    
GCUGAUCGACCUUGGAUCUCGCCUGCGCCUACUUCACCUUCAAUGAACAACUAUGAUAAGUCUCUGACAACAGACAUGCCUGAAGAUCAGAAGAUGAGCGCAGAGCAGACAAGGCCAAAGUCGGC
((((((.(.(((((..(((.((((((((.((((((..(((((.......(((......))).((((....))))......)))))....)))).)).)))))).)))))))))).)...))))))
------CGACCUUGGAUCUCGCCUGCGCC------------------------------------------------------------------------------------------------ l=23 a=2 c
--------------------------------------------------------------------------------------------------CGCAGAGCAGACAAGGCCAAAGU---- l=23 a=0 c*
------CGACCUUGGAUCUCGCCUGCGCCU----------------------------------------------------------------------------------------------- l=24 a=3 ma
-------------------------------------------------------------------------------------------------GCGCAGAGCAGACAAGGCCAAAGU---- l=24 a=0 ma*

-----UCGACCUUGGAUCUCGCCUGCGCC------------------------------------------------------------------------------------------------ l=24 a=1 
-----UCGACCUUGGAUCUCGCCUGCGCCU----------------------------------------------------------------------------------------------- l=25 a=1 
------CGACCUUGGAUCUCGCCUGCGCC------------------------------------------------------------------------------------------------ l=23 a=2 (c)
------CGACCUUGGAUCUCGCCUGCGCCU----------------------------------------------------------------------------------------------- l=24 a=3 (ma)

mb-00011
ax-1001111
ku-01
ss-111111101110
fn-111
